Scaffold Ga0208697

Basic Information
Taxon OID	3300020507 Open in IMG/M
Scaffold ID	Ga0208697_1001320 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020507 Open in IMG/M

Scaffold ID

Ga0208697_1001320 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3917
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3917

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046332	Metagenome / Metatranscriptome	151	N
F048095	Metagenome / Metatranscriptome	148	N
F066725	Metagenome / Metatranscriptome	126	N
F091311	Metagenome / Metatranscriptome	107	N
F091313	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208697_10013202	F066725	N/A	MCTRGVTWFTNPEGGEFTPTQLWDLREDLTKHLIIVLGRLTVEIGSRFESPATLPHYMHLMHDTILKLKSIDSNWHLVYSAEKENCLRIMQHDCRCGFKNRRRKQLQ
Ga0208697_10013203	F046332	N/A	MNQSAQVSSSGHNRYTSMVSQGPLINGWCHERDQLVRRLIKMVNDVFVDDHYPGDNLVWVEPMREIANAIVRLDPSWRLECVTERYKCMVIKHPNCFCDRPITRANQ
Ga0208697_10013204	F091313	GAG	MATQSNNNSSTPQYRLIDGRYKIVPQFIQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEEPRDFVHEMKDVLHQIHLYDDDWELKVRTSSDGHLIFRHYNCKCDDIIQHESVSSSQQ
Ga0208697_10013207	F048095	N/A	MSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRNILRTVTIDSDIAILTLIYEANIATLENILEAPDFVLKSKGLKLFYDYLERIKATEFREWKDQMVYLPIGPISASPLWNGIIAEE
Ga0208697_10013208	F091311	N/A	MVNNKTTIKENREITEVADETFYRHQRYLEFIRKSLTDILKVIRKGTTKNRATKETRSCNIRFIEFAQEINDQIPSENMTEDDKISIKIILDLFYRISIALEIKSRVKLMKTLKRLAREVFILSLRSRKSWKKKLPRFLIANKHVSI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208697_1001320

Overview

Ecosystem & Geography

Associated Families

Sequences