Scaffold Ga0208091_1002000

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1002000
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3127
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015718	Metagenome / Metatranscriptome	252	Y
F023805	Metagenome / Metatranscriptome	208	Y
F081250	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_10020001	F081250	N/A	MNFNYRDFFIHNDDLHIIKEQLSIIDEMPRVAKENALSSNAKDVWDMYAKGGKLDNEKIAKTLGINVDTVKKIIDICEKKFLENKTVIQIANEMKLTDYTIMQVLNNAIPDWKRTRDVNFTKDAEEIYNLHKQEKNPDEIVNLINQNRERHLQIKLDKVNLVLKIVDIATKQMENDGQMNAHEIERQINRDKDINVIIRLIKKLGIGKIKYKHKFTEEQDAFILFNYLQGIGPRASARSFNDKFKTESNNTESNELNISHNTITYRLINSILKSKSESEISEYALKLLTKYFPTVDIT
Ga0208091_10020002	F015718	AGGA	VKIVPIIRDGKIVMGDINEQYPVTNVMWQYMDDMTLGEYLASLGVDYKSYGFIKGFPRSFYLRIGFYEPGYVITTNSHLYDSLVTVRDNDPWHRKFKVFPVGSNLYGNDVYYYFSLMAKGLSSYGNDIYNCYVHVTTVNGKSVYCVDVLN
Ga0208091_10020005	F023805	AGG	MIKLKDILLENDAPNIFIPRRMENRVERLIKTYIRNGNKGNLNLQDLNLTVLPEMLKDITVDGDFYCGNNNLTSLENCPKTVSGVFGC