Scaffold Ga0208091_1000388

Overview

Basic Information

• Taxon OID: 3300020506
• Scaffold ID: Ga0208091_1000388
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8236
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011285	Metagenome	292	Y
F079657	Metagenome	115	N
F093772	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100038810	F011285	AGGA	LKYLFIILMLTNCSKDISFDPGTTILKQTVKFIYNESTKENPVMEIQY
Ga0208091_100038818	F079657	GGAG	MLKTLWPKYLLFKNKIEAINIEQIDFENINDAKAEFTTPPVLKKTDNHRFICRDGNCRLTIAKKENYTHALCYVLEEEDEVLFFKRLNDLVYKNEKENIPMNDFEFIFKDDFLNALISKCKNLFN
Ga0208091_10003885	F093772	AGG	MFRDKELAMEIKNFKRNLSNHYQRDYDYTMDELDLFIEEFMALQKGTTKLTPLEARLLMGQVHISYDISRERKLPIETRYYGELLSRLIKSYGH