NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1000003

Scaffold Ga0208091_1000003


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1000003 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)126989
Total Scaffold Genes191 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)126 (65.97%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007110Metagenome / Metatranscriptome357Y
F084821Metagenome112Y
F086677Metagenome / Metatranscriptome110Y
F093303Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_1000003116F086677AGTAGMINSDYLIDYSDWFDEGGYCQVYPIKDKKDLVFKEFRNKKKAQESYKYHKKLAKFDLAPKIYSKICKLEFAKEDDLYQPDPSDWGYITELAKTHAANTKISMANIQYLVDEIYNKTGLKFWDCHWYNVGVVKRGRKKKVVCIDTGKESFDGNANAWANPDPGPKCSYCEKYECNCLS
Ga0208091_1000003135F084821AGGAGMKWIDLFQYLNERANDFKNLGKFPWQEEVQAFDFGTLEYYPLDFIQILPDQKISFHMDTSTTGEDNGS
Ga0208091_1000003136F007110AGGAGMNCIYCQDCMDFERYEFLVETGRKMICKDCSVENRAVGFMDWGHKTAPSLVLVPANATETIRKLDRANRRAR
Ga0208091_1000003160F093303AGTAGMSNLTQEQKFVIFWLYNRVAERIPPNPIKGGSDDIILDGINVTETVRELLQERLFV

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