Scaffold Ga0208088_1028413

Overview

Basic Information

• Taxon OID: 3300020505
• Scaffold ID: Ga0208088_1028413
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 707
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → lamiids → Solanales → Solanaceae → Solanoideae → Solaneae → Solanum → Solanum tuberosum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069712	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208088_10284131	F069712	N/A	HIQRVIGSILYYARAVDLTVLMALSTIASEQAHGTENTMRKTKQLLDYLATHSEATVRFHASDMILNIHSDASYLSEANAHSRACGHFFMGWKADPTKPIKLNGAFFTLCAILRFVVASAAEAELGALFLNCKQATIFRLTLEEMGHPQPPTPIHCDNSTAVGIANNTVKRQRSRSMEMRFFWVADAVEQGKFNIKYYPGKENLGDYQSKHHVGSHHTAVRPWYLHEPTSVRELP