Scaffold Ga0208088_1017259

Overview

Basic Information

• Taxon OID: 3300020505
• Scaffold ID: Ga0208088_1017259
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 960
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F041648	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208088_10172591	F041648	N/A	MEALKTTLTDNALTRYYELRIKYLEGENERLRNEARADFLTVLDFWIYAQRTIDTYVIFHKESHHEHYIDVLITMLETLEAHDKKALDTAINNLRIDVIARCKEAITKCQQITAAR
Ga0208088_10172592	F014956	N/A	MINIQDFALNASLSICPNHIVEPLHLKKWWRERGVGELEKYFYTGKKVSYDQEIDWKAISNHKKQMWYDSQNFQINMGHEYSKRQG