Scaffold Ga0208088_1006349

Overview

Basic Information

• Taxon OID: 3300020505
• Scaffold ID: Ga0208088_1006349
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1740
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F027779	Metagenome	193	Y
F041766	Metagenome	159	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208088_10063492	F027779	N/A	MSVIPALPKIPNSRPYTGNSDGAAAAPRAGMDEWIRQAVKYADGAIWNNGSWGVRNMRGSENLSVHATGRAVDLSYRKTEQHPTANRKGAVAFLNIVIANANALGVECVLDYFPQKFGRGYRCDRQAWKSYSKPEIHGAPGGDWHHYEISPAMADSPALVKQAFQRVFAEIPQ
Ga0208088_10063493	F041766	N/A	MVEVPTIGVQNMTEPKVFIYEVGRCNLDNGQEILVQIFRHEDTHKIIRAQIAFRTLAGDSWGVPTELDFQQ
Ga0208088_10063495	F000722	GGA	VTEEQYPETGITEETRRMYPETYSDKYNKVFMQFVDDIFRPNHVPAPKHTHDILLDELVIMYEASMEAGGEQARFNASVLRAAINVILTCTK