Scaffold Ga0208088_1001144

Overview

Basic Information

• Taxon OID: 3300020505
• Scaffold ID: Ga0208088_1001144
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4363
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000763	Metagenome / Metatranscriptome	901	Y
F017130	Metagenome / Metatranscriptome	242	Y
F034923	Metagenome	173	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208088_10011443	F000763	AGGAG	MNMKNPYILTAGAFLSAWAASNFALDYRAVLWAVLAGVFGYATPKK
Ga0208088_10011446	F034923	AGG	MTNNEKLLIICLIGAGISFIVMAVSSYKEAYDRGHRDGWHKGRAVNRSEFWSE
Ga0208088_10011449	F017130	AGAAGG	MGYAEFHTADGWVNVEDVPMIDTVNCQLCNEPTLASDITITARIVEGVVVAGTWSCNKCRAVNG