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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020505 Open in IMG/M |
| Scaffold ID | Ga0208088_1000317 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8084 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (5.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002778 | Metagenome / Metatranscriptome | 530 | N |
| F004839 | Metagenome / Metatranscriptome | 421 | N |
| F010541 | Metagenome / Metatranscriptome | 302 | Y |
| F033801 | Metagenome | 176 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208088_100031710 | F033801 | N/A | MKYEIRWKTGKVITDAENIEEAIKKFKELRIEVPDKEISIASFGK |
| Ga0208088_100031718 | F002778 | GGA | MKDSHFKNYQMKEYNAKMLEIKAFCEEINQWITTAPSAEHLDQCDEYLRQLSAYYSRYTMISGMNESIYAYLMMTCIKNMPDEEYKKIKHSSTLTDYYIKGKYPNATAIFEQCRAVQKLLIVTSDNYRTLLSSFRQERILVGHMTT |
| Ga0208088_10003174 | F004839 | N/A | MEKNFNNLQFKWTFESISDNIPTIMLATIVLTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATIVALIEIFFGLQEHYEGGEFITMFLFVGTIIVFGYLLEINFVDKGVEAYGINETKIIRRRKRRTIIKNVPEDSPKPLRRNITSFQLSLF |
| Ga0208088_10003178 | F010541 | N/A | MEKTIYSVMYFGNAKRYQDLCEEIAAYSKRHAVEKVYSKLRNEDYFPCDEFLWGGVVKDCDGNVIAEIGSETIEYDGGYFYAEPVIL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |