Scaffold Ga0208088_1000018

Overview

Basic Information

• Taxon OID: 3300020505
• Scaffold ID: Ga0208088_1000018
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30798
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (77.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001530	Metagenome / Metatranscriptome	676	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y
F058152	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208088_100001831	F018369	AGG	MKYSYIQMTDEGKRQLMRELSRELTDKKIAELMDQFADGVKTDSNGEPYIKIDRDEVLMCAVPMYTHFIDVNHIETVTANEEGSDE
Ga0208088_100001832	F046382	AGGAGG	MNKRNWPYGTDMSEPNWTGRTTRQMRDYKRSDDRIPPVAWVIGLIGLALVFGFFPLLSLVML
Ga0208088_100001839	F058152	AGG	MIDYSESLIKITLLVRQYRKLVLKGQFDAAADVAVDMQIAVVDLQEWSEAQCIETQNS
Ga0208088_100001844	F001530	GGCGG	LISKEFLLSEISDLEAESHKAQTFLIQAQATIAAYKMLIHKLEESQIEE