NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208484_1007731

Scaffold Ga0208484_1007731


Overview

Basic Information
Taxon OID3300020504 Open in IMG/M
Scaffold IDGa0208484_1007731 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1356
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022147Metagenome / Metatranscriptome215N
F037570Metagenome / Metatranscriptome167N
F039941Metagenome / Metatranscriptome162N

Sequences

Protein IDFamilyRBSSequence
Ga0208484_10077313F039941N/AMDIETLALRLEEIKLNRIEVLEEKKVLAEELLDGKLRIQLKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHARYRQQPS
Ga0208484_10077314F037570AGTAGGMNIKRLDLLKIRNLKFRASQRQSVIDRLLRKKDLEKDLWKVSIKTLIILAKIKFRCEELERISENLEQTVINGY
Ga0208484_10077315F022147N/AREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKRCRIQKSKDIATLEKVAIANKLLIKTLSEEIRNALKEQLALVSKVGSTFTNLSLMYTYIENNDSSLQSEAKSRQWSNEYQET

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.