Scaffold Ga0208484_1007731

Overview

Basic Information

• Taxon OID: 3300020504
• Scaffold ID: Ga0208484_1007731
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1356
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022147	Metagenome / Metatranscriptome	215	N
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208484_10077313	F039941	N/A	MDIETLALRLEEIKLNRIEVLEEKKVLAEELLDGKLRIQLKRSIMENMSLLIQLDLTLNEAEILYENLIECRLLHARYRQQPS
Ga0208484_10077314	F037570	AGTAGG	MNIKRLDLLKIRNLKFRASQRQSVIDRLLRKKDLEKDLWKVSIKTLIILAKIKFRCEELERISENLEQTVINGY
Ga0208484_10077315	F022147	N/A	REIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKRCRIQKSKDIATLEKVAIANKLLIKTLSEEIRNALKEQLALVSKVGSTFTNLSLMYTYIENNDSSLQSEAKSRQWSNEYQET