Scaffold Ga0208484_1003575

Overview

Basic Information

• Taxon OID: 3300020504
• Scaffold ID: Ga0208484_1003575
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2410
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032253	Metagenome / Metatranscriptome	180	N
F048095	Metagenome / Metatranscriptome	148	N
F091311	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208484_10035751	F032253	N/A	SQATETMSNDPRVIVKNLKESIVEGLPFLALLMKRLMVAINKLPHLVQIVIAPAAEQAQTKTAEMILQYESALLQDETLGKEDLITPIRFDVDSSNPAIISPEIRKIIATSLNELQATLYMIDMADQIISMISQLDFNRGTTATAIEAMKRLATDSKNIIDLPELKIGETIEVPISSITDPIGLLNATGIAEILLQR
Ga0208484_10035754	F091311	N/A	MVNNKTTIKENREITEVADETFYRHQRYLEFIRKSLTDILKVIRKGTTKNRATKETRSCNIRFIEFAQEINDQIPSENMTEDDKISIKIILDLFYRISIALEIKSRVKLMKTLKRLAREVFTLSLRSRKSWKKKLPRFLIANKHVPI
Ga0208484_10035755	F048095	N/A	MSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRDILRTVTIDSDIAILTLIYEANIATLENILEAPDFELKSKGLKLFYDYLERIKATEFREWKDQMIYLPIGPISASPLWNGIIAEE