NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208484_1002549

Scaffold Ga0208484_1002549


Overview

Basic Information
Taxon OID3300020504 Open in IMG/M
Scaffold IDGa0208484_1002549 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3088
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008351Metagenome / Metatranscriptome334Y
F013610Metagenome / Metatranscriptome269N
F015585Metagenome / Metatranscriptome253N
F016361Metagenome / Metatranscriptome247Y
F018161Metagenome / Metatranscriptome236N
F080871Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0208484_10025492F015585N/AMTKIRLHLYSKRLCIKYRFVKLKEVKMSPKNTERNQRLIKVINHCSRVAESKEVRELQLSPQLGELIKNLAGKGKEWSFVLITYPKRNSEVQGKPPSEIKAEPGLSEEEKFFSSSW
Ga0208484_10025493F016361N/AMCKKRELTKEPLIDGVNRPIGERSIPILMSKQLALMALIDTMTITMDPEKGKKVFQEIVSIMKELKNMEAKCTC
Ga0208484_10025494F080871GAGMSNPQRFSCSRSTIGFNQPKGERLTSSQLWERRNQLTTILIGFINATPNIKGIEVGGEIKRYREFCRIIETIREIDPDYHLVVAPRSEDCLRIMHYDCLCNHSHGCKCALLKKKNLS
Ga0208484_10025496F008351N/AMDSDQETELPEKCSDELVHTVRESVEKLFSLVNTEFSRPSASDEEEDFSLLKQICEAKADILKDNPYWSAFDHTTLLSTKALGRLDWLDAEGPWDGVRNIENYKVFKEALRELRECNPNWKLEEQEVIRRIICSNCGEVKSVPEKETLLESNPAK
Ga0208484_10025497F018161N/AMSELESKPDYSARRQVVRRIYKVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYLVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSDEGKPFPALNSKH
Ga0208484_10025498F013610N/AMETSTSTDNPEKKQEIEKQKTLVADLFSTLNLVFTQTKLGIERSDLLFRAVHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVIEDKWDCDTNKFLFNEIKDAMMKLRRFNNYWQLTEEDAI

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