Basic Information | |
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Taxon OID | 3300020504 Open in IMG/M |
Scaffold ID | Ga0208484_1002549 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3088 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008351 | Metagenome / Metatranscriptome | 334 | Y |
F013610 | Metagenome / Metatranscriptome | 269 | N |
F015585 | Metagenome / Metatranscriptome | 253 | N |
F016361 | Metagenome / Metatranscriptome | 247 | Y |
F018161 | Metagenome / Metatranscriptome | 236 | N |
F080871 | Metagenome / Metatranscriptome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208484_10025492 | F015585 | N/A | MTKIRLHLYSKRLCIKYRFVKLKEVKMSPKNTERNQRLIKVINHCSRVAESKEVRELQLSPQLGELIKNLAGKGKEWSFVLITYPKRNSEVQGKPPSEIKAEPGLSEEEKFFSSSW |
Ga0208484_10025493 | F016361 | N/A | MCKKRELTKEPLIDGVNRPIGERSIPILMSKQLALMALIDTMTITMDPEKGKKVFQEIVSIMKELKNMEAKCTC |
Ga0208484_10025494 | F080871 | GAG | MSNPQRFSCSRSTIGFNQPKGERLTSSQLWERRNQLTTILIGFINATPNIKGIEVGGEIKRYREFCRIIETIREIDPDYHLVVAPRSEDCLRIMHYDCLCNHSHGCKCALLKKKNLS |
Ga0208484_10025496 | F008351 | N/A | MDSDQETELPEKCSDELVHTVRESVEKLFSLVNTEFSRPSASDEEEDFSLLKQICEAKADILKDNPYWSAFDHTTLLSTKALGRLDWLDAEGPWDGVRNIENYKVFKEALRELRECNPNWKLEEQEVIRRIICSNCGEVKSVPEKETLLESNPAK |
Ga0208484_10025497 | F018161 | N/A | MSELESKPDYSARRQVVRRIYKVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYLVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSDEGKPFPALNSKH |
Ga0208484_10025498 | F013610 | N/A | METSTSTDNPEKKQEIEKQKTLVADLFSTLNLVFTQTKLGIERSDLLFRAVHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVIEDKWDCDTNKFLFNEIKDAMMKLRRFNNYWQLTEEDAI |
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