NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208484_1000900

Scaffold Ga0208484_1000900


Overview

Basic Information
Taxon OID3300020504 Open in IMG/M
Scaffold IDGa0208484_1000900 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6433
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019779Metagenome / Metatranscriptome227N
F026196Metagenome / Metatranscriptome198N
F031758Metagenome / Metatranscriptome181N
F039102Metagenome / Metatranscriptome164N
F040464Metagenome / Metatranscriptome161N
F043229Metagenome / Metatranscriptome156N
F045533Metagenome / Metatranscriptome152N
F096608Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0208484_100090011F045533N/AMAEKPEDNILSSDQRPANEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSNDYLINKILRYINAINSNKEWNHEDNIRLFTEVRRDMIVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEK
Ga0208484_10009002F026196N/AMSEPSNSCNNITFSCEKNTIGLNQPNGKYFTSLGLWQRRDKLVEDLINLINATKVNKSGADSIKIQEYSKIQSIIEEQREIDPDWHLVMRQQGGGCLRVSHYDCYCNSGNDSKCSHNTVPLVKPRTLRDVTEIVKSIQETMNAINTNISFDENTGTMMKLYFFIKELRRVEPNRLPCLREVSRNPSKESKA
Ga0208484_10009004F040464N/AMNPTVNPEWLRRGYAFVGQTQEHLKDVLKELTLKMRTMTDKEIERDLRKGLKVTGDITLELSRFVRQGLEQRRTFKGLLGTLIETKNWALIRLILEITEELKERSSSSSLLFSIAKEILRELQRIQAIIPIKELEQMETSLINIQYWRLTRHLRI
Ga0208484_10009005F096608N/AMNPKTELVKEILQVIDTLTPMEIKTIPESVVFKLYQLKKRIKELDPSWEFNDPYNHYIFRILILLDALEVDETFSLEKHGKICQMMHREVRDIRRTNPLWRMDTSLVVEFINSTPLKEEDREREKDKLPEDLVDKKGSSPFKKY
Ga0208484_10009006F043229N/AMTQKGVRVEIETIEECGCEPHECYCRHNKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDTIDHTIPWNSARNKLRYIDLCQSINKLKIIHPDWEMDLENSKNHYLCRCRSCLEKRKMYQQTLDETSLEKSTPYKGSRNKISN
Ga0208484_10009007F031758N/AMSVNKIQEKELLIKNLFKLINEIFIVKPGITFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHEVISLIDEVNTLDEMNLEKQRKTFRKILKTTKALRQTDQLWRMNPMIILEFLKWNSKTIMSAEQVSKKPREQVPLD
Ga0208484_10009008F019779N/AMKDHPAIDFRPMDVEGEEDRFSETLDSPDIENEIECSGERCFTPPEDDWEIINRGSDFIIHGLENLDEQLDIIATQIDTENQIEEILKNIRKGFSIIDDIILYATTFINEASEAKVEKFRGFISDLLDFANTNITKTLVIVRKLRARSLLSLVPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRRTIRRRVSRRYSI
Ga0208484_10009009F039102N/AMNKDQEKEKLIRNLFQAVDNIDSTESKETISQAATRIYHLKKEIVKIDPTWRVRDPYNYYVYRILSLLDGIDTRENPNVHNNQELYLKLFHETRMIRKTNQSWRLNVPRLVEFMTETSKVTHPNKIEPMETEEVPKPSSSN

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