Scaffold Ga0208484

Basic Information
Taxon OID	3300020504 Open in IMG/M
Scaffold ID	Ga0208484_1000475 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020504 Open in IMG/M

Scaffold ID

Ga0208484_1000475 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 09AUG2011 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9377
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (17.39%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9377

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (17.39%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029090	Metagenome / Metatranscriptome	189	N
F029723	Metagenome / Metatranscriptome	187	N
F032529	Metagenome / Metatranscriptome	179	N
F058098	Metagenome / Metatranscriptome	135	N
F061798	Metagenome / Metatranscriptome	131	N
F075668	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208484_100047512	F058098	N/A	MSPFRKKVDRIILTPTVRKIIFNMSERRQFQIINKETTLLYGAVKLLAENNFKAVIDDIDTNCMELNQTNIQMYQKLNETLSCLKEIDPEWKIAAETRETFVPVVLIECLREGVSLIDTSDLEDLNFGIYNLVHQILGRIREFDPTWSINSSMRFEALT
Ga0208484_10004752	F029723	N/A	MTSSDSSNGRQKVLMTPMQLSVYWRKVAAEALKLLNDVHLDEDHDSEDNLSAYKLFHEQLRELKRIDPVRPFNQLTMGPTHPIVTSSCNCTLCDPSSEDIDSEDSTESVLI
Ga0208484_10004753	F061798	N/A	MAEGRFIDLKSQDIKHIDEILLRYVSPDNRDSARRDLVTRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSENGNPSEGKTNS
Ga0208484_10004754	F032529	N/A	MAESRRLIDVTDAERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGNSEEQIRRRALAWEKLYEIRQVPVKENTSSKETSVEDTSCEVTSSTDTTSKNEAKK
Ga0208484_10004755	F029090	N/A	MKQKSKVATFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKADVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALHYQEPALPDLGNLTENDFN
Ga0208484_10004757	F075668	N/A	MSNEYSVNDVRCLVMYALNKVDTQKDFCENFRVFSGLYVAIMAFKIYEPNKQFELEKGPLLCEQNHSSFYNSRSNKSCRKINRLNQFYE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208484_1000475

Overview

Ecosystem & Geography

Associated Families

Sequences