Scaffold Ga0208087_1000412

Overview

Basic Information

• Taxon OID: 3300020502
• Scaffold ID: Ga0208087_1000412
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8120
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032253	Metagenome / Metatranscriptome	180	N
F046332	Metagenome / Metatranscriptome	151	N
F048095	Metagenome / Metatranscriptome	148	N
F051885	Metagenome / Metatranscriptome	143	N
F066725	Metagenome / Metatranscriptome	126	N
F070906	Metagenome / Metatranscriptome	122	N
F078638	Metagenome / Metatranscriptome	116	N
F091311	Metagenome / Metatranscriptome	107	N
F091313	Metagenome / Metatranscriptome	107	N
F091933	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208087_100041210	F091313	GAG	MATQSNDNSSTPQYRLIDGRYKIVPQFLQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEDPRDFVHEMKDVLHQIHLYDDDWELKVRTSSDGHLIFRHYNCKCDDIIQHESVSSSQQ
Ga0208087_100041211	F046332	N/A	MNQSAQVSSSGHNRYTSMVSQGPLINGWCHERDQLVKRLIKLVNDVFVDDQYPGNNLVWVKPMRDIAEAIVKLDPSWRLECVTERYKCMVIKHPNCFCDRPITRANQ
Ga0208087_100041212	F066725	N/A	VIDLSLEPTSEKPNSFAKMCTRGVTWFTNPEGGEFTPAQLWDLREDLTKHLIIILGRLTVEIGSRFESPATLPHYMHLMHDTILKLKSIDSNWHLVYSAENENCLRIMQHDCRCGFKNRRRKQLQ
Ga0208087_100041215	F070906	N/A	MTENTERSLVNGSDEPNGDETSEFIKQRDHHTTEIAKLLNSVREETSFRSNLSTYQSIHRHLMFLKDLDPEWGLTPFWDEECLRLRYINCTCLDEGTPV
Ga0208087_100041216	F051885	N/A	MSSGSKIEAPNTSSIATYVNMPLTKEQLKEKDKLSLQCIELAINLGVKQPKDFGECVEDLYNFKKKIKMYDPEFKFLDDKNVYIYQLLSRLDSIDSSLLPDMSKNTAICQRIHLENRVIRKNYPSWRVDFEQVLKTLKRNSNSEVQSKIRYILQMDKDGNPVLIREICNNSRSLGKDFECDCPDCKVSGDMKHLSLCPK
Ga0208087_100041217	F078638	AGG	MKKFFRMSSKTESEKLGGMTVPKRSHDPAIIQKKFELIAKLLTLVNSLPPGTEAPNYLIMRKIFSIKKEIHDLDLMWRLTDEFYFQEYGVLSSIDLINTRKPWNAAINTIRYMDLQRDLMTMREKFPEWEFTLSDVRKHSTCKCSECQKQKLLTAKEEPLSKDEPSSSSSSSIEGLD
Ga0208087_10004123	F032253	N/A	MSQATETMSNDPRVIVKNLKESIVEGLPFLALLMKRLMVAINKLPHLVQIVIAPIAEQAQAKTAEMILQYESALLQNETLGKEDLITPIRFDVDSSNPAIISPEIRKIIATSLNELQATLYMIDMADQIISMISQFDFNRGTTATAIEAMKRLATDSKNIIDLPELKIGETIEVPISSITDPIGLLNATGIAEILLQR
Ga0208087_10004126	F091311	N/A	MVNNKTTIKGNREIAEVADETFYRHQRYLEFIRKSLTDILKVIRKGTTKNRATKETRSCNIRFIEFAQEINDQIPSENMTEDDKISIKIILDLFYRISIALEIKSRVKLMKTLKRLAREVFTLSLRSRKSWKKKLPRFLIANKHVPI
Ga0208087_10004127	F048095	N/A	MSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRDILRTVTIDSDIAILTLIYEANIATLENILEATDFEMKSKSLKLFYDYLERIKATEFREWKDQMIYLPIGPISASPLWNGIIAEE
Ga0208087_10004128	F091933	N/A	MERNNRRRITFENFKGGLKIVLAYTDIAIETLRFNLAGGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSRGPFECEVVMVPLLRNLSELERIIQLGNNEMALTTLTAYSNHLAQLIQVPYENWTATFLNTHIFCKEDATYTVFVNTKCQQTLI