Basic Information | |
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Taxon OID | 3300020499 Open in IMG/M |
Scaffold ID | Ga0208084_1000413 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10238 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (89.66%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Associated Families | 9 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000450 | Metagenome / Metatranscriptome | 1126 | Y |
F002071 | Metagenome / Metatranscriptome | 596 | Y |
F006984 | Metagenome / Metatranscriptome | 360 | Y |
F018349 | Metagenome / Metatranscriptome | 235 | Y |
F024549 | Metagenome / Metatranscriptome | 205 | Y |
F037190 | Metagenome / Metatranscriptome | 168 | Y |
F047643 | Metagenome / Metatranscriptome | 149 | Y |
F091432 | Metagenome / Metatranscriptome | 107 | Y |
F091920 | Metagenome / Metatranscriptome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208084_10004131 | F006984 | AGGA | MPNWVYNTLTIQGPKEEIDYIKDRLNRPFTLAQETYGMGDISLSGFPTKIEQVTYSNPVFAFFNIHSYKDEGITDEEYAC |
Ga0208084_100041312 | F091920 | N/A | MKNRFRVEIYDANKLNDLTIYSEQGIDKEYLTEIVFSNLSRFSGNVKAYVYDELKKSKTVALFLPEQTVNKYKPKQLTRIELGLI |
Ga0208084_100041314 | F002071 | AGGA | MATLTIGQTFTTTNSGVTGVIKAVDNHPSGVARILLDVNGTERWTSVSAK |
Ga0208084_100041319 | F024549 | AGGA | MYKLTTIYDGGISKETYGFSDALEAFEAFARCKDVGFAMENATYNLTLPNGKMYTKNFDRTGLVSQK |
Ga0208084_10004132 | F000450 | AGGA | MGDRANFVFVQPSGETIVLYGHWAGYNMLENLAEAVAKAQPRWSDPSYATRIAISNMIGDAWASETGWGLQVNEISDNEHKIPVVNWLECTFSLHEEDSFHNESNKVRGMKNEAMFTMDLRAFVEKYTDAKILV |
Ga0208084_100041321 | F091432 | AGGA | MDLKDFRDFITAQRLAEIKEKRNSNLTAILSVANATITETTRKEN |
Ga0208084_100041326 | F037190 | AGGA | MDRYLVIDITSDGLAFETAQLDFYLSPLGMLLVALSVVAYRIYKVKQTKKARY |
Ga0208084_10004134 | F018349 | AGGAGG | MDYREGFEDGVKFTREVIINNIRRWAEAHDDGAVLDWVADKIEFGTLDHDL |
Ga0208084_10004135 | F047643 | AGGA | MYYQLQAPSGAVCKAAYWEAEFSGLDPYYLEDNAFELGTGSIEKVSALISKYKLDILVESDYQPTGYTRR |
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