NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208084_1000413

Scaffold Ga0208084_1000413


Overview

Basic Information
Taxon OID3300020499 Open in IMG/M
Scaffold IDGa0208084_1000413 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10238
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (89.66%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F002071Metagenome / Metatranscriptome596Y
F006984Metagenome / Metatranscriptome360Y
F018349Metagenome / Metatranscriptome235Y
F024549Metagenome / Metatranscriptome205Y
F037190Metagenome / Metatranscriptome168Y
F047643Metagenome / Metatranscriptome149Y
F091432Metagenome / Metatranscriptome107Y
F091920Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208084_10004131F006984AGGAMPNWVYNTLTIQGPKEEIDYIKDRLNRPFTLAQETYGMGDISLSGFPTKIEQVTYSNPVFAFFNIHSYKDEGITDEEYAC
Ga0208084_100041312F091920N/AMKNRFRVEIYDANKLNDLTIYSEQGIDKEYLTEIVFSNLSRFSGNVKAYVYDELKKSKTVALFLPEQTVNKYKPKQLTRIELGLI
Ga0208084_100041314F002071AGGAMATLTIGQTFTTTNSGVTGVIKAVDNHPSGVARILLDVNGTERWTSVSAK
Ga0208084_100041319F024549AGGAMYKLTTIYDGGISKETYGFSDALEAFEAFARCKDVGFAMENATYNLTLPNGKMYTKNFDRTGLVSQK
Ga0208084_10004132F000450AGGAMGDRANFVFVQPSGETIVLYGHWAGYNMLENLAEAVAKAQPRWSDPSYATRIAISNMIGDAWASETGWGLQVNEISDNEHKIPVVNWLECTFSLHEEDSFHNESNKVRGMKNEAMFTMDLRAFVEKYTDAKILV
Ga0208084_100041321F091432AGGAMDLKDFRDFITAQRLAEIKEKRNSNLTAILSVANATITETTRKEN
Ga0208084_100041326F037190AGGAMDRYLVIDITSDGLAFETAQLDFYLSPLGMLLVALSVVAYRIYKVKQTKKARY
Ga0208084_10004134F018349AGGAGGMDYREGFEDGVKFTREVIINNIRRWAEAHDDGAVLDWVADKIEFGTLDHDL
Ga0208084_10004135F047643AGGAMYYQLQAPSGAVCKAAYWEAEFSGLDPYYLEDNAFELGTGSIEKVSALISKYKLDILVESDYQPTGYTRR

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