Scaffold Ga0208050_1009349

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1009349
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1124
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001781	Metagenome / Metatranscriptome	635	Y
F015988	Metagenome / Metatranscriptome	250	Y
F062746	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10093492	F000441	AGGAGG	MKMSDTYINDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQTEGQ
Ga0208050_10093493	F001781	GGAG	MKPQDKDKLNECLSILDTTDLGLSLVWLWTWSTIKNFMGDETFIMKKTEDEMWDCLCEAVEAGHGFSLEYGAEQHHEDVMEWMLNRDYMVDSMFEQEDEDEDE
Ga0208050_10093494	F000263	AGGA	MQPVSTELEPHLQRMVDAGVSGLDIMHGELKNLMLMAEQDLADALAQEELSEEAMDSMVRTECEGRLDTLVALYQLTYDLSFAIGARNEATR
Ga0208050_10093495	F015988	GGAGG	LTKSSKFMEYMKIHLISLEQDLENIAQEMELLDPESKACKELDYEYNHMGGQILTARHFLSVATDIMNESERM
Ga0208050_10093496	F062746	N/A	YLRTPSDLMDKQPLRKDLEDAVSFMQGLWAEGYFD