NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000684

Scaffold Ga0208050_1000684


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000684 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5160
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (77.78%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F006842Metagenome363Y
F017469Metagenome / Metatranscriptome240Y
F024719Metagenome / Metatranscriptome204Y
F026822Metagenome196Y
F058947Metagenome134Y
F069714Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100068410F069714AGGAGVNINIKESYMPEYTKVITFECEGEEYLAEVYVGKNCSDYNLYQGNKKLEDKPAWLEKAELDPEFNFLFFIDELGWEYERNGISEGEVKV
Ga0208050_100068411F017469AGGAGMKTICQFCGWEVSKPEWYNKQYDRSGYVCDNCLMDNATEREKERVNG
Ga0208050_100068412F026822AGGAGMAEPRYLEGDEYALTGTELDIVKCKECASEYDYAEYHSYTCSDCEDKMIARERERV
Ga0208050_100068414F024719GAGGVSNVIELPNRGKMMVILYEVSDTQGIAIWGGENPVEALKWYRNSPTGSKIWVSQWEADEEDAKQVLEPMEITPIVLATITDCMERWGNGKS
Ga0208050_10006844F058947GAGGMNITCELQDLDELMAKAGVLLTGNAYDRAQDFLQDNCACATYKYLIERG
Ga0208050_10006847F006618AGGAGMSKIKQHLENEVVITHSNEENTGWKRYIAFNYQGNEYELTLFWEEFNGYDTFWRVPERTPDWVAEWDSEAHQGMSFEHYLDELTWEMNK
Ga0208050_10006849F006842AGGAGGMKATPAICGDHLVPISECDCLSYMKEIASSAERLIQLAKEREELSK
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