Scaffold Ga0208050

Basic Information
Taxon OID	3300020498 Open in IMG/M
Scaffold ID	Ga0208050_1000409 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020498 Open in IMG/M

Scaffold ID

Ga0208050_1000409 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7073
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7073

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (18.75%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-89.404444	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-89.404444

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F009134	Metagenome	322	Y
F010673	Metagenome	300	Y
F016268	Metagenome / Metatranscriptome	248	N
F085601	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_10004091	F016268	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRTWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPIFPLYIG
Ga0208050_100040911	F010673	N/A	MNPKLIPILERIIARETILLSFHADNLPQAALAYVRQHYLNDNFLWLAPDEQDLIEELPPFADNLSESIRPGGGIGNPDSSVYHLFDDGSLWLKTNAYSSVWTDATDFAVEIILPRMELSRMDAQLLRAIEMEDAVESVRADFYSSFAHVLNRDCGIPYCDAREHWNAYSRQLGDGAREEAELGGSESGRKEGLRFAESFTVKA
Ga0208050_100040916	F002227	N/A	MKLTIQSKQNAQTIVDLFNAILTGEEAENGATPLSIYDDNKHICSLIAKDGHQILELIIEREDGDVLCSSTPDLETL
Ga0208050_10004093	F009134	AGGA	MQTVCIEKKTQSLESLSALVRSKLAADAASTLERIDSYDLDGIKDESVRESILGSVAKRSALVFGWSEQGEQASVSINLLGQMPDRITEIQVTGEPSEK
Ga0208050_10004099	F085601	N/A	MNYYVMQTALSSGSKPQLVQWSKTESDAVAYARQQLDLWREVGVANPPRYEVHYSGLRGSALWSSLD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208050_1000409

Overview

Ecosystem & Geography

Associated Families

Sequences