NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1000267

Scaffold Ga0208050_1000267


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1000267 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9195
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (57.69%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F000744Metagenome / Metatranscriptome909Y
F002243Metagenome / Metatranscriptome578Y
F013172Metagenome / Metatranscriptome273Y
F032934Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0208050_100026718F032934AGGAGMKPITIKQFANRWYLVWSDTGRTIASFASEFEAYAARRFMIEYNKTGGNQ
Ga0208050_100026719F013172GGAGGMTYYWATKLNNATNRRIGKLQGEDVKIDTTTHAGRQVIGYNYLEVVVEEDDE
Ga0208050_100026722F000744GGAMVMIETTVQLNVHEIGVILSALQELNLREENRIAREFGSVPALYNKLYSLWEQMDSSQTGLRNDVVPSF
Ga0208050_100026723F002243GAGMTAFPTLQSSDGTMLVGYYPVKTPYGDISQEWCLQVLSWKGVDQISKKFLNRVEKTLAIRERLALGYTETGDNSDLPQLGNPFYGAC
Ga0208050_10002675F000345GGAVTLVSLELSLEKMTEKKNSWQEWWDSEACKQLQKSHKEGVERAVGKYFMLSEEDKLDMVQAICYIMCKAEEKGTSHRGLQDALGVYPAGFWVSELMDVHNALWSYYHDQKKEKELRDDLDALDNFIK

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