Basic Information | |
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Taxon OID | 3300020498 Open in IMG/M |
Scaffold ID | Ga0208050_1000267 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9195 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (57.69%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.099444 | Long. (o) | -89.404444 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000345 | Metagenome / Metatranscriptome | 1253 | Y |
F000744 | Metagenome / Metatranscriptome | 909 | Y |
F002243 | Metagenome / Metatranscriptome | 578 | Y |
F013172 | Metagenome / Metatranscriptome | 273 | Y |
F032934 | Metagenome / Metatranscriptome | 178 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208050_100026718 | F032934 | AGGAG | MKPITIKQFANRWYLVWSDTGRTIASFASEFEAYAARRFMIEYNKTGGNQ |
Ga0208050_100026719 | F013172 | GGAGG | MTYYWATKLNNATNRRIGKLQGEDVKIDTTTHAGRQVIGYNYLEVVVEEDDE |
Ga0208050_100026722 | F000744 | GGA | MVMIETTVQLNVHEIGVILSALQELNLREENRIAREFGSVPALYNKLYSLWEQMDSSQTGLRNDVVPSF |
Ga0208050_100026723 | F002243 | GAG | MTAFPTLQSSDGTMLVGYYPVKTPYGDISQEWCLQVLSWKGVDQISKKFLNRVEKTLAIRERLALGYTETGDNSDLPQLGNPFYGAC |
Ga0208050_10002675 | F000345 | GGA | VTLVSLELSLEKMTEKKNSWQEWWDSEACKQLQKSHKEGVERAVGKYFMLSEEDKLDMVQAICYIMCKAEEKGTSHRGLQDALGVYPAGFWVSELMDVHNALWSYYHDQKKEKELRDDLDALDNFIK |
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