Scaffold Ga0208050_1000267

Overview

Basic Information

• Taxon OID: 3300020498
• Scaffold ID: Ga0208050_1000267
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9195
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (57.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000345	Metagenome / Metatranscriptome	1253	Y
F000744	Metagenome / Metatranscriptome	909	Y
F002243	Metagenome / Metatranscriptome	578	Y
F013172	Metagenome / Metatranscriptome	273	Y
F032934	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208050_100026718	F032934	AGGAG	MKPITIKQFANRWYLVWSDTGRTIASFASEFEAYAARRFMIEYNKTGGNQ
Ga0208050_100026719	F013172	GGAGG	MTYYWATKLNNATNRRIGKLQGEDVKIDTTTHAGRQVIGYNYLEVVVEEDDE
Ga0208050_100026722	F000744	GGA	MVMIETTVQLNVHEIGVILSALQELNLREENRIAREFGSVPALYNKLYSLWEQMDSSQTGLRNDVVPSF
Ga0208050_100026723	F002243	GAG	MTAFPTLQSSDGTMLVGYYPVKTPYGDISQEWCLQVLSWKGVDQISKKFLNRVEKTLAIRERLALGYTETGDNSDLPQLGNPFYGAC
Ga0208050_10002675	F000345	GGA	VTLVSLELSLEKMTEKKNSWQEWWDSEACKQLQKSHKEGVERAVGKYFMLSEEDKLDMVQAICYIMCKAEEKGTSHRGLQDALGVYPAGFWVSELMDVHNALWSYYHDQKKEKELRDDLDALDNFIK