Scaffold Ga0208720_1001534

Overview

Basic Information

• Taxon OID: 3300020495
• Scaffold ID: Ga0208720_1001534
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 20APR2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4413
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053809	Metagenome / Metatranscriptome	140	N
F092936	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208720_10015342	F092936	N/A	LVIIAAIKIQSHIPLAPGALFTVENPAIVQKWMANGTLPLIFTAQSIKSVLHESELYEIPPVPQSKSQHGFILSGVDITLLNMQVTNINCGGAMCDGLNMYQNSVTADRCPCYNVLDREGKVCLVLSLKVSDTKNNLQFCVHNHTSKSLTQLFMKRIPKGAVAATITGNQKHMGNLSTKVMEMLTLGNDYDGFNISGWIKRGTIADSGVVQPPTGSKWDKPQQVDSGGLTYHLTKIAYASPPSDRLLGEYQFNAGSLV
Ga0208720_10015345	F053809	N/A	MVTMLRQEIYTHYLFHNSYQYNSIMRPYTYTPKSHIRPYIRNTLLLIKDQLPLLHLHVNYLSQLQLINRRRLHDFYVLSGKRHTREAGAIRVAEIGAAYAEDRIRAHLGALIVDNNDLLAEWFRLKTYTDGHTPLICSNRPALQMNTMPFDTHGVCTIQGDGIPHPADMRSTIQIIERILLPHAQSAARCCTITDYRNHNAAYMCVREFVRETKRSLDDVRQRLYFLQYDEIDLWRSVQNFEYNIEDSSTIIRELYANTQPTQPFSQVVTPTTNNGVAHNVRKSPNYLTPQHR