Scaffold Ga0208200_100265

Overview

Basic Information

• Taxon OID: 3300020487
• Scaffold ID: Ga0208200_100265
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 13AUG2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6279
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001507	Metagenome / Metatranscriptome	681	Y
F025743	Metagenome	200	Y
F061860	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208200_10026510	F001507	AGG	MTTTYKPYTIHELVEEIYEDNFSHFDFMENMNGGDCDCNLHNAMNLIVKYWGE
Ga0208200_10026515	F061860	GGA	METTQLDPRLQKLVDLGESGTDILHGELKNMMYECEKILVPLLENSDELGSDEEYEDTVERLYNSGYMDALSSIYALTYKLAFAISDRNKNA
Ga0208200_1002652	F025743	N/A	MKFVYADLLTPSQLMEGDLINIDDDIVEVISIVDDATGDNYTITHRNDYGEEEETTCTYEDMFKLYVFIDEDE