NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208054_100792

Scaffold Ga0208054_100792


Overview

Basic Information
Taxon OID3300020485 Open in IMG/M
Scaffold IDGa0208054_100792 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 03JUL2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3461
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021716Metagenome / Metatranscriptome217N
F028720Metagenome / Metatranscriptome190N

Sequences

Protein IDFamilyRBSSequence
Ga0208054_1007921F028720N/AMATKRKGFWKDYSKQVVEMTREKNKKDPMDAFWCLNKALLDLYKVMENKGGPKEVNRYSGYVLHFVVLLDTIVLNYGDLSYAMDDPDTFDPLCKSTLLSVASSLSGIARTFWVEKRIHNRGDPVRDEWESLEYNSSGETCHMLKLALTRVLRYIKTNTDLSLCEMAEQHVDIFYGREPSPARAYDLC
Ga0208054_1007922F021716N/AMHIILVGASHGWRLFQALKRIQGYGVTFKVTCLCVRGARFADLFWPQTVQKDDFLVVIPFGNDVHIRRFVKYDRFQKVFHLQKFVPYPKSYWDFLFSRLHEKLSGKNCKITVIDNFYRHLCCERHRHKGWLTYQTAVNKELRSQFKNTSVHILDHRLLFDNPRLIKNSALEYRKLQGDAVHFEDYMPIAKNLLKRL
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