Scaffold Ga0207418_101049

Overview

Basic Information

• Taxon OID: 3300020483
• Scaffold ID: Ga0207418_101049
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 05AUG2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2760
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -89.404444

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007682	Metagenome / Metatranscriptome	346	N
F094896	Metagenome / Metatranscriptome	105	N
F098728	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207418_1010491	F094896	N/A	ILNMEIVRVTPVNSDSEDEETMERVASPVVVEAVSDVTDTNEATGSADNVVNNSPNLVIAEEGDYVEEAVEGRADVPSGPGPFSEDVTMDDFLPRPTRGSVVFLAFSDW
Ga0207418_1010494	F007682	GGAG	MRLEHKRDDLESKIGYLEADVAYLRSDYLFLNDGDKKDAMFATICGLDREIEQLKSELASVNSQLSYY
Ga0207418_1010498	F098728	GGCGG	MYVIVAPGWSELSFRSELVAGDAWRFCLLLINLVIDDVVIKAVVHVHVSKANMALNVALSIAKICTGQHDTMQNIMNPNAKIATAQVTIFNAVLDSVIFSNLMSVGSNIVISLIFAAL