NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208464_101465

Scaffold Ga0208464_101465


Overview

Basic Information
Taxon OID3300020482 Open in IMG/M
Scaffold IDGa0208464_101465 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13SEPL2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1735
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048095Metagenome / Metatranscriptome148N
F091311Metagenome / Metatranscriptome107N
F091933Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208464_1014653F091933N/AMERNNRRRITFENFKGGLKIVLAFTDIAIETLRFNLTGGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSRGPFECEVVMVPLLRNLSELERIIQLGNNEMALTTLTAYSNHLAQLIQVPYENWTATFLNTHIFCKQDATYTVFVNTKCQQTLI
Ga0208464_1014654F048095N/AMSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRDILRTVTIDSDIAILTLIYEANIATLENILEAPDFVLKSKGLKLFYDYLERIKATEFWEWKDQMIHLPTRPMSASPLWNGIIAEE
Ga0208464_1014655F091311N/ATEVADETFYRHQRYLEFIRKSLTDILKVIRKGTTKNRATKETRSCNIRFIEFAQEINDQIPSENMTEDDKISIKIILDLFYRISIALEIKSRVKLMKTLKRLAREVFTLSLRSRKSWKKKLPRFLIANKHVPI
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