Scaffold Ga0207911_102530

Overview

Basic Information

• Taxon OID: 3300020481
• Scaffold ID: Ga0207911_102530
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 23JUL2008 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1425
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021051	Metagenome / Metatranscriptome	220	Y
F035737	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207911_1025302	F035737	AGTAGG	MTEKEFFVNDPEWAEELERGVETYTDMLFEAVYSEGADEEVTETLSGEPFCGCNRCFWRETLFYIVPKLLHGYEEGKIELEE
Ga0207911_1025303	F021051	AGG	LRSKGQKESLKHEKRLAKTIGGTRNAASGALWARKGDVRSDDLLIEHK