Scaffold Ga0208201_105812

Overview

Basic Information

• Taxon OID: 3300020480
• Scaffold ID: Ga0208201_105812
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1004
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F031497	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208201_1058121	F031497	AGG	MKKTQEIKVAESLVNLMDDHWFSPTIFGHYLAEQPLYTLDRIMEMIVSVISEQAKMYEFYSNRGTSTEGLLLANELNECIKAYQESNQLNNLKLPSRSFKVPKREEPVRQNIFGWKEEEDPFNPS
Ga0208201_1058122	F000852	GGA	MATKREYLKQQGIAVGVRGRFSGAAKVALAEATAKGITFTAEAPANKAK
Ga0208201_1058123	F000441	N/A	YINDQLNKAQQLLWGGSETENIEAHNIIAKLIKDRIEQTDLL