Scaffold Ga0208201_101912

Overview

Basic Information

• Taxon OID: 3300020480
• Scaffold ID: Ga0208201_101912
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1865
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011579	Metagenome / Metatranscriptome	289	Y
F102571	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208201_1019123	F102571	AGTAG	MKNQLNIFEMSFDEFVQHEEKERRRKNLCDECRGSGKIAEAGIFSKYYKCEKCKGSGKSKLIIKLI
Ga0208201_1019127	F011579	N/A	VPASDAESITYNELPKLYELYKEKQWDGVSQFVADKRGIPNIYWKDKGSAFQNKIMKNSE