Scaffold Ga0208201_100390

Overview

Basic Information

• Taxon OID: 3300020480
• Scaffold ID: Ga0208201_100390
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3950
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016151	Metagenome / Metatranscriptome	249	Y
F030360	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208201_1003903	F016151	N/A	MTQAQLKQLIKECLCEIDFAPGFRPTQDLTIVSTVTGSDVDHLKKYVLELHRVLTANFGNDVQFEEKLKMSILPNKDKQIETTFTIIDIIDELMSKTVRENLQDIHEQLTMWSINQDLVIDFTFKIKK
Ga0208201_1003907	F030360	N/A	FVRMVDNYQKWNESITADEPRETYEDDIFNCLFEYDLDGYNLAEYLKSKVNLAFCDAELVDILDDMIYVKKSLEDEMLKQWVKENFLTIPDDVIGKKVNAKQGYKKYENHYITTIRPDTYEVTISDNINKKGGYIVGFENVTFL