Scaffold Ga0208201_100298

Overview

Basic Information

• Taxon OID: 3300020480
• Scaffold ID: Ga0208201_100298
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4534
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Lake Mendota, Madison, Wisconsin, USA
• Coordinates
  • Lat. (^o): 43.098333
  • Long. (^o): -89.405278

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020680	Metagenome / Metatranscriptome	222	Y
F023832	Metagenome / Metatranscriptome	208	Y
F032635	Metagenome / Metatranscriptome	179	Y
F091428	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208201_1002982	F032635	N/A	MKRQWRYVDKNVHYYHQVYNGLVIGQAYNLAHTIIWGAKIPINHDEDLYLGQYVELEYAKHAIEEYWDEKDRTLEVPHEYLLSKS
Ga0208201_1002984	F023832	GGAG	MANPTRKMIEVYEMLKDGKPLKFDTLVSRLGCKPVTAMVLICALKRDCNADIETIRDGRKVESYQLHNAPAIASKMVGKTTTTKAPKAAKVAVLKTKTTVARKSKAAVVDDGSVPTVEVEEVGFDELASLKAELGLSDSYAE
Ga0208201_1002986	F020680	GGAGG	MNTANPLTLASASDIKTLVSTGAVAHADALARVDSVLTRKSLTDGKKARWTRLREWLVREQAQLDCVNS
Ga0208201_1002988	F091428	AGGA	MGITLKMRREMVQVERDVMKGLREDLRKIRAAMNQSRLNIKMHQEVLVEERKLKRIVMEDQRALRAQKRAENRTARIAKMEVRLAALKARA