NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208201_100002

Scaffold Ga0208201_100002


Overview

Basic Information
Taxon OID3300020480 Open in IMG/M
Scaffold IDGa0208201_100002 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 16JUL2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51343
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (25.81%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (31.58%)
Associated Families19

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F004723Metagenome / Metatranscriptome426Y
F007169Metagenome / Metatranscriptome356N
F008356Metagenome / Metatranscriptome334Y
F009682Metagenome / Metatranscriptome314Y
F011485Metagenome / Metatranscriptome290N
F020140Metagenome / Metatranscriptome225Y
F022862Metagenome / Metatranscriptome212N
F024782Metagenome / Metatranscriptome204Y
F025688Metagenome / Metatranscriptome200Y
F035227Metagenome172Y
F035278Metagenome / Metatranscriptome172Y
F036669Metagenome / Metatranscriptome169N
F041765Metagenome / Metatranscriptome159Y
F046324Metagenome / Metatranscriptome151N
F048935Metagenome / Metatranscriptome147Y
F053245Metagenome / Metatranscriptome141Y
F060851Metagenome / Metatranscriptome132N
F090104Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0208201_10000225F001840N/AVKEEKDSEFLICDCYSHGLLVEKFDDEEVCLSLFERGLSGRMLGWSERLRWCWQILRYGKPWSDFIILNTENQKKLKKFL
Ga0208201_10000226F036669AGGAGGMGMYDSIECKCFLPMPDEPKGYTGSHGFQTKDFDCALDIYIIDENGQLFIERRETEWVEGDPNAKGFLDKVGHIKTKKTWLESVNKTCTVQFYDYFSSNNTDYDYWIVYDAVFIEGKMKDIKLTTFEATPNSERKKKDIEFHKKMREWDEFRKTRRYKYFLNPYNKILKFICDKVYKALCFLSSRVWRVHNFLMIK
Ga0208201_10000227F009682N/AMKKDLYMKNPNEKIVIQSDDLKYDGKNIIIPSYYDGVICDYLNRVDVKGMNDADHQDYLAFRKFFEDIMDYKVDKGGN
Ga0208201_1000023F004723N/AMNKGDKFIHTDMVGKKHELTYTGTRRIVKDCEFEFFVDDKGGGCFFTDTEVKKMEKISD
Ga0208201_10000230F024782N/AMIEKAIERLRAFNDWRTGKDERTMTEAGIVPAQITADIKTVCDELEKLISMYASRN
Ga0208201_10000233F022862N/AMSVRYYSYTSSDLEMKFTPQQIELLIKTRDEIRDLTEKQHKLYDDLVKELNVTIYAEDWLFDYIYNECGSIEELEQRM
Ga0208201_10000235F007169N/AMSYQTEFDFETPEQKEQRLKDWHDQEAEIDKLFGEDDNYYTYNKYVDKLIGLLPYRLGWGFKNNWYELRWWAKCKYQKFRYGVSDDDVFSLETNIAKFIVPRLQYLKKVGKMGIPMKFLPNDYTSLSEEDQRKAEKIAEKEIDRIMDEIIFAFDYIIDPDKYLPFPESSTKWDLKDKNYFNREKTIEEKVAWDEYMKKCEQYNERKTQGLQLFVEHMDILWI
Ga0208201_10000243F060851N/AMKAILEFNLPEDQKRFEIANQAIDMFSAICHFEDRLRSYHKFGHDFKTADEAIEAIRTLLYEEINIRRINIHD
Ga0208201_10000254F020140N/AMTHKFAIVVDRNFYDKVQYNNDFYLRVLVLDVVRALVPDEESVDKYSSDIFYKCAKSIAGEVKVFEDENSVIFYLELSSGYLDDFFEKPLDDLE
Ga0208201_10000256F025688AGAAGMKFILNIDGTNNGGKFLENYIGQTVDIESLYKDIDINSPPLATLKTEDNKQHSIQLIDVRFIGENVFIQCFVIQHDDKHGGKALLRLKPVVNLVKVVNP
Ga0208201_10000257F053245N/AMKHVTVKIGDKDLEDLSEIFKNEANFKPQAKQDLLIIEILRQVLNNPKMNITEEVDL
Ga0208201_1000026F046324N/AMTCLKVKKEAKLEECAVPWSGDTISVCDKCRMSIWDFDFDEFHIMNDGEPFIN
Ga0208201_10000260F041765N/AMLNHKQIMEDSAAFFNKEVDKVIYKITNAKNDKQRTKYLKQLMALKNRLTLEVKMIDELGNF
Ga0208201_10000263F008356N/AMNVSEFERTKPVKTLKRIKELEKLIKEEQIKTENLYANRIATLDSMLKAITELKETFLKG
Ga0208201_10000265F011485N/AMIKSFKLFIVSILASVAVFAADTESSVRASINAGYNNHYIVNGLAKTSGQGFAGFDIGSTYFGVDGYVGGVILPDSNSIDESHWNVGVGKALKITEKFSLRGDLQLLRHQSSIVGGRNSIELAPKIALVNPYLTPYIRGSHDFNLKQSGYIVGVERPTDVFGWVTVTPAIEYGKFTDYDVVAAKIGVSRTFFNHLQPYAEVGWYDNNFSASKYKFASQEFSGDIVAVAGVRWNF
Ga0208201_1000027F048935GGAMNKINKLNAEFKKATKAQKRVMIAQDVLAQLKAKRYVAESGCWVRIHYNPTTVAETDSVQELFVEKKIESCNVCALGGLFMSCTNFNNNTLLEDLDDASEGLGNLIEEEQLSNKLNEIFSTNQLKLIESYFEANGGFFRDYDEDDRIEVFYNKNSSDKKRLQLIMENIVENEGTFVPEKLKI
Ga0208201_10000271F035227AGGVSDNSSNIHRAINVTALTDKEIKKYSLVKVGDSFKKDDLVLLYDDQYVKIAEGNKLLKYKVLKENTVYRRK
Ga0208201_10000274F090104GGAMQEVQSIISKLIESIKTVDSNKSIPYLVKDIDKHVQEAYAELYKYREQKSVYKPLNDNKRGHCC
Ga0208201_10000278F035278GGAMNDKHIKKIIDKQFKIANVDLKYEDIRDNQTPNWLTKYSYTPEDNEKWKNWTMKYMREKMKLTKDKALIETAWIDLNYGLRTSTQSSKKSKKK
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