Scaffold Ga0211503_10021611

Overview

Basic Information

• Taxon OID: 3300020478
• Scaffold ID: Ga0211503_10021611
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4295
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_034
• Coordinates
  • Lat. (^o): 18.49
  • Long. (^o): 39.8483
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F001493	Metagenome	683	Y
F074779	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_100216112	F074779	GGA	MKTFSKYLEEAQAGFNTKDMIFTNADTPALILSPTALERAFGTLERIKAWHVTDLSGLKGLIKLQGKKSSISVLTEIEPSDHQPFEGIETGGGFVVELEGTELVSMDQDAWSERLEGGRRGISVTKELFPNMYRHLEFMVKKIYEKYSKEPYSRDSRKAGIAFNKLGQTLSQKEKGQFIKEYIDNCETILTKNKRARDELRKYGRAMGANNKKHFYNESVVNQISIKNVYVVSEKWEQFGRVDWGSEGDDELKYIKTVWKNVQMKSQKELVTLVNKK
Ga0211503_100216113	F000659	N/A	MKTFSKYLEEESKYIVSKNPQDKKWYVMGHVGRNKWMPVSNGFKDKAQAKKWAKSQDKVDDAARGEISGV
Ga0211503_100216115	F001493	AGTAG	MKSFKGYLNETFQDWKSGSAPAWTESLSTMLFDLPRDGIVDIHIPLSPSIMSRIWPKSIRSKAFHLTDYDGLGKLKGMQGGKRSISAFYNIDDYMIANGIKTEGGYVVELEGDVLAASPDDISSQPDKSGRRWITVSSLLNGPFDADPGLGGRTKLRGIEKDIMALLTDIMAKNDLGPYKKTMTTTEINKGWTYLGRSTGGKEKSIIIKDYIDGMEKIMKKYSKPLRSVLTDYTKKKTLEPDPDSGDVAMWDELVVNNFTIQKIHVGPEYAEDFQDDDDIDGFPFELYQDTGDMVDYINRTLR