Scaffold Ga0211503

Basic Information
Taxon OID	3300020478 Open in IMG/M
Scaffold ID	Ga0211503_10000974 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020478 Open in IMG/M

Scaffold ID

Ga0211503_10000974 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26024
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (67.74%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

26024

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (67.74%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_034
Coordinates	Lat. (^o)	18.49	Long. (^o)	39.8483	Alt. (m)	Depth (m)	60
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_034

Coordinates

Lat. (^o)

18.49

Long. (^o)

39.8483

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049214	Metagenome / Metatranscriptome	147	N
F083393	Metagenome / Metatranscriptome	113	Y
F086698	Metagenome	110	N
F106168	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211503_1000097414	F106168	GAGG	MKLKTRAKNFYKRNKLLSIGIMGIGAWYVLNQQGMAPSLAPAPVKRATSAPSAPVARYAYDAYPPVRNEPYTNSTHFFGPADGDPVFYGF
Ga0211503_1000097416	F083393	GGAG	MKIVDKIFKTADKYPLLTFAAGSLGIMYLFESYGSMNGLGQATFKTSGTDMDDLFRKTGHTGAPAPGTGRWDTVMPSPQGPQVRYDADYHTQPLMMDPALEQTLMERGKRPVVQSASIRHGYEPQVFAGMRNRL
Ga0211503_1000097418	F049214	N/A	MANLNQGYRSGNAFGRLANVSYENGIMGNDVALKPGYLLRIRDTYALVTGVEAMSVDLFFTDTVNVGITAVSSSVATDFDGTHGEALEQYGLASISAYYDLGTSTVAEADKTGNILAPDYDSGFITFKALEPYAGNLYHLCPTLPLQPKYMVKDSGDWHSLNAYPPYDTSNGGLPVGFKGDGTAANTEHIGSVSAKLYLKQPSGVSKHTLDEASDGESARATASETTIEGISGFLDGEMSPLANPNWSFGMIIEHGEASLPAFRIVNDSDEYVLDGRCRLVGWKYKILELSQEQLSTLKAKAGGRLRFMYYNPVTYQSSGFLSDYLAM
Ga0211503_100009743	F086698	N/A	MAGGGDSEKVQMHGTTGSGNILPISAITQETSTSMLFTRQGREDFASSTHPRMEVPSHTVAKQLPLLCGLNDVVAQTGFLITADSSNTVTVMIGGSSVSATDGIPLVAGQSIMIDIVRLSKIYAIAATDPSSGTCNLFWLDM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211503_10000974

Overview

Ecosystem & Geography

Associated Families

Sequences