Basic Information | |
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Taxon OID | 3300020478 Open in IMG/M |
Scaffold ID | Ga0211503_10000068 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX556025-ERR599111) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 100350 |
Total Scaffold Genes | 111 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 97 (87.39%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_034 | |||||||
Coordinates | Lat. (o) | 18.49 | Long. (o) | 39.8483 | Alt. (m) | Depth (m) | 60 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F021088 | Metagenome | 220 | Y |
F023318 | Metagenome | 210 | Y |
F040060 | Metagenome | 162 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211503_10000068105 | F023318 | GGA | MANNTNIFLVTNSNDERPVAFSNVGSALEFVRDSHGDLNAEGSALMLETASGLVPATNKVVKERNFTNRVLRFTATDATGAKLVSDAQSKLDGALQACELVGIDPDNVAKVSNLRARVLELQADLDGSEASDVVTFDLAVLPLHKRKHNKRS |
Ga0211503_10000068108 | F040060 | GAG | MNIQIGDLVHGFYFHRKIGVVVEIDHKAEFAFVQYTDTTKSWEPLCNLRKAIR |
Ga0211503_1000006873 | F021088 | GGA | LGQERPRKQATIGDLVICVDSARVNEHGHNRKFIGLVLDKSITVYRIQVVDSGEEIYWPMTATYLWKETNEY |
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