Scaffold Ga0211585_10149397

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10149397
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1530
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED131 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030245	Metagenome	186	Y
F084850	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_101493973	F084850	GAG	VKIAWEKAKLWCFHNWRILVIVGAIALAYILGGKKVKALQVQLQMARELYKKELDAVENASDKKTEMQTEANIKYKRALEIAHKTAMDSDDHIQLIKAERVRRLVEENKDNPEAIDRILADEFGILVMDPKDKP
Ga0211585_101493974	F030245	AGGA	MLLFLLSTALAEPLMVHLEEGEAAPFDGRLMNDEAVANIIAGREMSVEQCEIQKELAISLTKADLQLEIDYLKAELETEIAKNTTLLEIRDTEIATLRKEMKPNKTMWAFFGGFLLATGTSLGTYYAVREIDANNQ