NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211585_10096764

Scaffold Ga0211585_10096764


Overview

Basic Information
Taxon OID3300020477 Open in IMG/M
Scaffold IDGa0211585_10096764 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2027
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.9103Long. (o)-142.5767Alt. (m)Depth (m)140
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000245Metagenome / Metatranscriptome1468Y
F000659Metagenome / Metatranscriptome952Y
F005685Metagenome / Metatranscriptome393Y

Sequences

Protein IDFamilyRBSSequence
Ga0211585_100967643F000659N/AMKTFKKYLEEASKYIVAKNPSDKKWYVMGHVGSNKWMPVSSGFKNKAQAQKWAKSQDKVDSAARGEIGDV
Ga0211585_100967644F000245AGGAGMKTFKQYSNESYLDDKINRMVIDAIKKKKLAKFPVNATDDYKMKKGKPAFTIPSPSGDMIIKVWLRPMAKPAPKTMIAYNYELDDKK
Ga0211585_100967646F005685AGGMKKFNEYSSFEDKILDTLKKGPCDLMSLSHKLKEDILPVSSMLEHLKVFDKVEVYKEKWQIKRKKK
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Institute for Fundamental Biomedical Research
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