Scaffold Ga0211585_10008606

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10008606
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9776
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022779	Metagenome	213	Y
F079939	Metagenome	115	N
F093730	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_1000860614	F093730	GGAG	VTVFVRCENDGRWRLWVRSAAGEAPAGVRLNRGGLFPYETLFDHQDHAEATFQAGRLQEYIEDRERVLMANRKRKNRWR
Ga0211585_1000860615	F079939	AGGA	MAIDQKEQQCIDIILENHPGDSWIYTNDRFSELDGLFVRNGVVRAVAEIKSREKPLGTYEKEMLGWNKMEAGQWASKAFRCPFYLFSYHPMNDVVAAYRITDEAGRFIRKYEVNDYEQNRTSEDRQSKIVRKTAWVENKDPGLLARRGLRCIY
Ga0211585_100086069	F022779	N/A	MAGKRKTTAKKKAVPIVKNTISAEEKASRLEALRNAPIAMPKSVLTARADQESKLGSGVKCGRRTGYTPDRIEALLKNIRSGLPIMRACALAAIPTSNLYDWTKRYSDLSDAIRQAESEYQAFALGTVNEGIANGDGHLAMKLLGARFSDEYATSKKVDVRSMHVRSSISADQLAGLQSARLETDVVSAADAIETEQAAALPEKLTPDSPQDDGLAENDRGEPPTTRGQESNTPPRLKQSHTRNSE