Scaffold Ga0211585_10004824

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10004824
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14467
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040391	Metagenome	162	Y
F066145	Metagenome	127	Y
F097139	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_1000482412	F040391	N/A	MAQKTNPTTDLVKRIMKQISGNLTEEDELIPEVAIDGSGEIWCWDPTNRCHRKLYRGVKAFILYENYDNFGRTLIYTHAGDMICIDPEELLHTGYD
Ga0211585_1000482414	F066145	N/A	MINKMTRKKKKIVQRINEVEIINRRTRKYRKINLKEKEIIVFNEDLKEFQLLPPLSASYEETSEPCNG
Ga0211585_100048245	F097139	GGAGG	MKLLMENWRKYLTEDITVDLEGPTGAMPPHLLRKQKRQKDAQDLLKSMGFSVHRELGRGAFGVVYEVENSTTGERSAAKVVSDESTREIENYKFAMEEKAFMPEKYAKYLPNVKQLITGGGSTIILMELLEPLDPQTAQELFAAQDAPTVSKKTERILKNPEAVAEIVEKAIEHNTILDQIRLTPEQYSEITSVAVNAATQSPHSDADELINTIYGAVVGTSTFQSVVGKAFVPATSIAFEKALKDTILYYFDKQIVPVHQPKPGDEESDRGYWTGPSLEKVEGMFPEAEGLMSAMKYFMQDKGWRPKDVHIKNVMRRPDTKDFVIVDLGLFKRGIYQ