Scaffold Ga0211585_10001579

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10001579
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30856
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (87.04%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028617	Metagenome	191	Y
F055649	Metagenome	138	Y
F092865	Metagenome	107	Y
F098013	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_1000157915	F098013	GGAG	MPRKKKETEAVEKHFLYELMGMHTEALKEHLIAVNDALYYHEEKVRDVNSYKYRIDQIMKVKNWLRVEEETLNG
Ga0211585_1000157929	F028617	GGAGG	MSEKVWRKGHVWTKAHLEKDVRLVDVRNFAKRKKAGLADDVHDLHKWSPMSDSEMKAFLTGYHGALDDLQKWCMEQVSE
Ga0211585_1000157930	F055649	AGCAGG	MTDARDLWIVQLDDLIKHAIKIRDDNVMKYKRNMKKAFEMGINMLVLLMKAMIEEMVEDKKDE
Ga0211585_1000157935	F092865	GAG	VHKYLGESQWTMCGRYVKDIKGMMYVMASDKDHEVTCKACRRYIDERDTEEAE