Scaffold Ga0211585_10000956

Overview

Basic Information

• Taxon OID: 3300020477
• Scaffold ID: Ga0211585_10000956
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42894
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (85.96%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.9103
  • Long. (^o): -142.5767
  • Depth (m): 140

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021397	Metagenome / Metatranscriptome	219	Y
F041251	Metagenome / Metatranscriptome	160	Y
F049037	Metagenome / Metatranscriptome	147	N
F049696	Metagenome / Metatranscriptome	146	N
F049924	Metagenome / Metatranscriptome	146	N
F060975	Metagenome / Metatranscriptome	132	N
F071313	Metagenome	122	N
F093989	Metagenome / Metatranscriptome	106	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211585_1000095626	F021397	GAGG	VKIDPKFFGFMLFIIAQTGSAIWWASGLSAEVKRIGGIQGRAIPALEAEAKQCGIEIHNLKKLTGDQKEVQEAVKDLDVMVYRLESIESMLDKILATKVR
Ga0211585_1000095639	F093989	AGGAG	MAGKQAFDNTNKGRFFLNERKTAKDPALSGPGNYNGTDMRVAAWINPNEDADNNKVWKAFDYLAENAVINMRFSEPKKGGGRSSSSDMDDDLPF
Ga0211585_1000095643	F071313	N/A	MGDLSKGEIRALIGILSFRDPNSTNLAFPSINTIAKRCGMTPSYCSKQLNRIAERGGILKIHRRFNNSNQYEFIWTGCTPPVEGVREPPVHVPLPNRPSNRPLSIGEFLKQYPKPSPPSGWQSYIWANATKEWKTRGLEDIKDQIFLDMRDRLQRGWRDVEYWPNPATYLKQQWWKQPMEGRTTTDRETSDTRYF
Ga0211585_1000095644	F041251	N/A	MGLWYGYKGVNERPGVMKEYQLQDITEIAKAIKSGDPAENDIGTVIDGFFWFPDEMQWAAQWQKEKEVDSPDGYFAMLLDPDIFEDEEDDEEIMAGIEYWWHRSQIYSAAYLINNKPLIESKYTEDIAQDSLKDLLRMQSEVKESFAEKGIKVGIDAKPKDIWMVIRTTAQNIHDNVRGV
Ga0211585_1000095648	F097503	GAGG	MDCDTFDGIVEMFEQRMIEGCIANEFKCTYNAEKGEFIAEINGKYYVAMTREKK
Ga0211585_1000095649	F060975	AGGAG	MGKTIRRNPVARNSAKFNKPKTVRDKKKDFYRPDSKRDLEEAIEDLSFDEDNRKDAIIIQYQDDMARNQEDGWPYED
Ga0211585_1000095650	F049037	GGAG	MSESPCEMRHFAKMEKCHNYWLCIEGSRACNDFKLFYDTGKITYHDRSPNWYIDMPPQTITVRELSERCGFGKETNKLKHWLGLRTFPLIEDPLGFYFIRHIDGAIENTYTGKSSKRLRNAQAACRQVVLEAQVRESTARAQNNVGRVVRQEMGGDAAELRSEEDPGEN
Ga0211585_1000095651	F049924	GAG	MRKYATQRLIAKDVPVHLKHLFEGQNLRFRGRGSRVKAVETVLKSKKLREKYLWEGWKEMPLPKVVKGLTYRFNQDLPLEFADRMSVYCR
Ga0211585_1000095655	F049696	GAGG	MSGIALVPMKIHTQKGKRRLWLEEQRYGLDGFSPGSKFKVTYNDDSIEIESDPEGSNKVFTRVKKPSKLHPEERRFAIVSLHNSKLKAIFGDTEDGVDTFCRYEQMPGYLKIWPADKVESFADELAEGIEQQLAA