Scaffold Ga0211715_10152299

Overview

Basic Information

• Taxon OID: 3300020476
• Scaffold ID: Ga0211715_10152299
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1126
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_148b
• Coordinates
  • Lat. (^o): 33.9044
  • Long. (^o): -56.7834
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027653	Metagenome	194	Y
F043978	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211715_101522991	F027653	N/A	NEVKKRPIVVDKFQQRVVKKSWLRNEDVYPNIPNIDVFVNWLMEIKEHKYFDKFNYYLFGGFISWPEKTKDIDILITKRDGQYATLKELEELMVNMFNSAYDTHGFFLDTCYMRIPQWIADYPRNKEILKSVERKQLFITITKYKPEYVVRFKRYGKLNCCYMGTWEKFWKDKDIESEMIHRWVDLDANYARIIDLRRIIKYYENNNKRNIGDFLNEFQEYSGY
Ga0211715_101522992	F043978	AGGAG	MISFIIPFSTIEKDKFLNLNEKEDLWEENDAGNIVYSTIKTIKNINSLKCEKEILLVDNSHTWPDIELPNVRVVEGWQALPLEELEKIPEYMNHRDIQASLDNLGCLTMWVSMAFHLGTQEAKGEYIVLQHNDTFYHQDCIDEMIKQ