NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211715_10000609

Scaffold Ga0211715_10000609


Overview

Basic Information
Taxon OID3300020476 Open in IMG/M
Scaffold IDGa0211715_10000609 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26884
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (56.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_148b
CoordinatesLat. (o)33.9044Long. (o)-56.7834Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001066Metagenome / Metatranscriptome788Y
F043442Metagenome156Y
F064085Metagenome129Y
F077769Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0211715_1000060924F077769N/AMGTKIKAKYDGACKFCGEEWIVGDDLYYQKNPKAICSDEPCFNQQGGVVKSFTYKKDDVIITKIPDIDVGDSVKQVAEMLQQYVVVAHHLTKSMYPELDVNTHTFGQIRSKIIDQLQYATFLSRSGQD
Ga0211715_1000060933F001066N/AMSDEDIFKIKPLDKHASKVQLDGRKAFSPFNSAKHLKTANIPAECDQCVYRSIDAGGNGKCPKYEKGALCAIRKDFVAMINQLDTRDPKHVKTMLDMLAKLSFENVLMALYESKMDGNIPDRNTKSEVNTLLKIISTIGEISNKIEVSETTTLNKKGDIESIFRQIKANKKGE
Ga0211715_1000060934F043442AGGAGMKIFFNGNNKAHMEALEQCKVKNVMLSFKYSYANITKFRNIFDEIFVVAGTKTEPDRYHELLKKHKENYDYATQFDVYYNMDETLKHYKKEKDMGIDWTLPVLQENYLHHLSKLRLEPNSYVCLGEVHGRAETEDQIRKLPANLKFHGLAKGRYITQTRQFESLDTSGWISAAMSKKCEIWNNNSTTVMYFGEKGKGMIPMLNHACEIHKEFLEIIGVKKEDILDGEYYALLKAPFALNYMPLCKQYGILEDNFNL
Ga0211715_1000060936F064085AGGAGMADLKVVASGICEECGHSQKDHEGNTVCDVEDCDCTNIGSY

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