Basic Information | |
---|---|
Taxon OID | 3300020476 Open in IMG/M |
Scaffold ID | Ga0211715_10000609 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 26884 |
Total Scaffold Genes | 39 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (56.41%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | TARA_148b | |||||||
Coordinates | Lat. (o) | 33.9044 | Long. (o) | -56.7834 | Alt. (m) | Depth (m) | 250 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001066 | Metagenome / Metatranscriptome | 788 | Y |
F043442 | Metagenome | 156 | Y |
F064085 | Metagenome | 129 | Y |
F077769 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211715_1000060924 | F077769 | N/A | MGTKIKAKYDGACKFCGEEWIVGDDLYYQKNPKAICSDEPCFNQQGGVVKSFTYKKDDVIITKIPDIDVGDSVKQVAEMLQQYVVVAHHLTKSMYPELDVNTHTFGQIRSKIIDQLQYATFLSRSGQD |
Ga0211715_1000060933 | F001066 | N/A | MSDEDIFKIKPLDKHASKVQLDGRKAFSPFNSAKHLKTANIPAECDQCVYRSIDAGGNGKCPKYEKGALCAIRKDFVAMINQLDTRDPKHVKTMLDMLAKLSFENVLMALYESKMDGNIPDRNTKSEVNTLLKIISTIGEISNKIEVSETTTLNKKGDIESIFRQIKANKKGE |
Ga0211715_1000060934 | F043442 | AGGAG | MKIFFNGNNKAHMEALEQCKVKNVMLSFKYSYANITKFRNIFDEIFVVAGTKTEPDRYHELLKKHKENYDYATQFDVYYNMDETLKHYKKEKDMGIDWTLPVLQENYLHHLSKLRLEPNSYVCLGEVHGRAETEDQIRKLPANLKFHGLAKGRYITQTRQFESLDTSGWISAAMSKKCEIWNNNSTTVMYFGEKGKGMIPMLNHACEIHKEFLEIIGVKKEDILDGEYYALLKAPFALNYMPLCKQYGILEDNFNL |
Ga0211715_1000060936 | F064085 | AGGAG | MADLKVVASGICEECGHSQKDHEGNTVCDVEDCDCTNIGSY |
⦗Top⦘ |