Basic Information | |
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Taxon OID | 3300020476 Open in IMG/M |
Scaffold ID | Ga0211715_10000432 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 32445 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (56.52%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_148b | |||||||
Coordinates | Lat. (o) | 33.9044 | Long. (o) | -56.7834 | Alt. (m) | Depth (m) | 250 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006550 | Metagenome / Metatranscriptome | 370 | N |
F040844 | Metagenome / Metatranscriptome | 161 | N |
F049699 | Metagenome / Metatranscriptome | 146 | N |
Protein ID | Family | RBS | Sequence |
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Ga0211715_1000043222 | F040844 | GAG | MSSKRWAKHFMNENRNNQFRNEQVELYKELRTVRANSRLLMEYEIKYKYDDEERIAIVDIADLTRKEAFRLNGPIHSSSAKKVLKDEIQKEGLEALGWKVTDIDTVY |
Ga0211715_1000043230 | F049699 | GAG | MSLNLTKQRITSAKGRVDRFIDQNLVTWATEEILLPGHTDIQKSVSNRAAEGLKLEKSGFMKIDLVWEFIVDNKPVHLYLEYGTKPHTITPKGKDHGGADVLHWKGPSGGFVIGQDHFASLVRHPGTQPKKLIEGIKDERLPKLQERIIREVNNFMEIDAL |
Ga0211715_1000043236 | F006550 | AGG | MQARINNNRKEDWNGKQLWRNPVDNRVYATDGAPTYSFDEAGGYPIYDYNVHFDAIKTAKDKLGTSYQHDAFLDNEFKSVAEDYVSDIKAGGRQKLAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEIAVPNLLISIDTVTKFDGMTRLDEGQRSPLKELPYTRANFTARKYGLKFIIHEEARLKNVHNVLQDSIQVASNKIEQRQSFDVIDELNSNLTAQAAAGVWDTFVASTDRSTNDPTIDLGIASLNIEGSGVGGKMNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEPGTSELSGIPGIGLVLDNSIQQGEVYCVDTELEPTCALFQGPQRVGSQHDEETGDDKYFVIDYHLASIIQSETGRQITGAITPLAW |
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