Scaffold Ga0211715

Basic Information
Taxon OID	3300020476 Open in IMG/M
Scaffold ID	Ga0211715_10000432 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020476 Open in IMG/M

Scaffold ID

Ga0211715_10000432 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32445
Total Scaffold Genes	46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (56.52%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

32445

Total Scaffold Genes

46 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (56.52%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_148b
Coordinates	Lat. (^o)	33.9044	Long. (^o)	-56.7834	Alt. (m)	Depth (m)	250
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_148b

Coordinates

Lat. (^o)

33.9044

Long. (^o)

-56.7834

Alt. (m)

Depth (m)

250

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F040844	Metagenome / Metatranscriptome	161	N
F049699	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211715_1000043222	F040844	GAG	MSSKRWAKHFMNENRNNQFRNEQVELYKELRTVRANSRLLMEYEIKYKYDDEERIAIVDIADLTRKEAFRLNGPIHSSSAKKVLKDEIQKEGLEALGWKVTDIDTVY
Ga0211715_1000043230	F049699	GAG	MSLNLTKQRITSAKGRVDRFIDQNLVTWATEEILLPGHTDIQKSVSNRAAEGLKLEKSGFMKIDLVWEFIVDNKPVHLYLEYGTKPHTITPKGKDHGGADVLHWKGPSGGFVIGQDHFASLVRHPGTQPKKLIEGIKDERLPKLQERIIREVNNFMEIDAL
Ga0211715_1000043236	F006550	AGG	MQARINNNRKEDWNGKQLWRNPVDNRVYATDGAPTYSFDEAGGYPIYDYNVHFDAIKTAKDKLGTSYQHDAFLDNEFKSVAEDYVSDIKAGGRQKLAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEIAVPNLLISIDTVTKFDGMTRLDEGQRSPLKELPYTRANFTARKYGLKFIIHEEARLKNVHNVLQDSIQVASNKIEQRQSFDVIDELNSNLTAQAAAGVWDTFVASTDRSTNDPTIDLGIASLNIEGSGVGGKMNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEPGTSELSGIPGIGLVLDNSIQQGEVYCVDTELEPTCALFQGPQRVGSQHDEETGDDKYFVIDYHLASIIQSETGRQITGAITPLAW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211715_10000432

Overview

Ecosystem & Geography

Associated Families

Sequences