NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211715_10000432

Scaffold Ga0211715_10000432


Overview

Basic Information
Taxon OID3300020476 Open in IMG/M
Scaffold IDGa0211715_10000432 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001750 (ERX556108-ERR598958)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32445
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (56.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_148b
CoordinatesLat. (o)33.9044Long. (o)-56.7834Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006550Metagenome / Metatranscriptome370N
F040844Metagenome / Metatranscriptome161N
F049699Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0211715_1000043222F040844GAGMSSKRWAKHFMNENRNNQFRNEQVELYKELRTVRANSRLLMEYEIKYKYDDEERIAIVDIADLTRKEAFRLNGPIHSSSAKKVLKDEIQKEGLEALGWKVTDIDTVY
Ga0211715_1000043230F049699GAGMSLNLTKQRITSAKGRVDRFIDQNLVTWATEEILLPGHTDIQKSVSNRAAEGLKLEKSGFMKIDLVWEFIVDNKPVHLYLEYGTKPHTITPKGKDHGGADVLHWKGPSGGFVIGQDHFASLVRHPGTQPKKLIEGIKDERLPKLQERIIREVNNFMEIDAL
Ga0211715_1000043236F006550AGGMQARINNNRKEDWNGKQLWRNPVDNRVYATDGAPTYSFDEAGGYPIYDYNVHFDAIKTAKDKLGTSYQHDAFLDNEFKSVAEDYVSDIKAGGRQKLAALRSSVNSAVDIVNVWETVLGKRDRVYAGKNLAKEIAVPNLLISIDTVTKFDGMTRLDEGQRSPLKELPYTRANFTARKYGLKFIIHEEARLKNVHNVLQDSIQVASNKIEQRQSFDVIDELNSNLTAQAAAGVWDTFVASTDRSTNDPTIDLGIASLNIEGSGVGGKMNRVGMHQLTYAKFTGNTFLRGVASNGPRDYSYEPGTSELSGIPGIGLVLDNSIQQGEVYCVDTELEPTCALFQGPQRVGSQHDEETGDDKYFVIDYHLASIIQSETGRQITGAITPLAW

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