Scaffold Ga0211625_10151363

Overview

Basic Information

• Taxon OID: 3300020473
• Scaffold ID: Ga0211625_10151363
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1268
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.9632
  • Long. (^o): -139.2276
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F029400	Metagenome	188	Y
F029601	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_101513631	F029601	AGGAG	VRFSASDDLFDGAKGIIVKCVHGPTYKQGLHYEVQTFDGHTIIALDFELERLENEVEIPN
Ga0211625_101513632	F029400	GGAGG	VKIGDLVTFCPEAWGTPLEDRPLGVITNVVLDDPRWTSMVTAIFPGDDIPYSSKIEDFEVVNENW
Ga0211625_101513634	F005524	AGAAGG	MDIGDKVQHFGTGSIGTVIDSSYEVETPFQQLCVRWEDDLAPHRDSWERRQDLSVVLSPA