NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10032465

Scaffold Ga0211625_10032465


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10032465 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3427
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032243Metagenome180Y
F040924Metagenome161Y
F046990Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0211625_1003246510F032243AGGAGGMSDNFEMYGAQEGWEHPDVGDLVEIASKSSLKTEVGVVVEPNEYIKNDHLWAQVLLNNGKMKILPKRELKVIQRGENNDEG
Ga0211625_100324657F046990AGGAGMSTVIRRRLKAGELVNVHADMDDIDDWSKSKGLAVVIDPDPDPERPGLIEIRYVRPRGLPEEQLPIQKLINNFSCTRVK
Ga0211625_100324659F040924GGAGGMKTKMVYLTVAVEMDAEADEKEVIETCDYFFDSASIKNTEIQEIFTEEEMQYFKDNEPDLYGLGSSRFA

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