Scaffold Ga0211625_10016030

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211625_10016030

Scaffold Ga0211625_10016030

Overview

Basic Information
Taxon OID	3300020473 Open in IMG/M
Scaffold ID	Ga0211625_10016030 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5470
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (76.47%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_122
Coordinates	Lat. (^o)	-8.9632	Long. (^o)	-139.2276	Alt. (m)		Depth (m)	115
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066240	Metagenome	127	Y
F088746	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211625_1001603010	F088746	AGG	MQKSNISGSYDCQVGTLIRDRNRVGIIYREIKQGTWTDQPLFNWKTNFEIYYDDGTICIMGSDTLQRLITSGAIELLEDEK
Ga0211625_1001603014	F066240	GAG	LMERVEYDFEVSVEFINGTNSFWVPTPLDEREEVGHTGIVDIGDDQTIFQKLVSLVHETGHIIFSINNTKFKEHRRIILFEESLAWYLGYDYALSVGVEINLKEYTQCVEEALQLYKEIR

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