NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211625_10001331

Scaffold Ga0211625_10001331


Overview

Basic Information
Taxon OID3300020473 Open in IMG/M
Scaffold IDGa0211625_10001331 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26580
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.9632Long. (o)-139.2276Alt. (m)Depth (m)115
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074779Metagenome119Y
F090233Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0211625_100013314F074779AGGAMKKFKAFIREDQALFNTKDMIFTNAETPALILSSTALERAFGKLERIRAWHVTDKVGLGKLIKLQGKKSSISVMTEIEPTDPTPFAGVETQGGVVVELEGTELLSHDKDAWSERLEGGRRAIPINKTDFPSLFRHMELMVKKMYEKFSGKSYSKNSKQGAIEFNHLGQTLSQKEKGQFIKEYIDNCEGILKKNKMGQKELRKYGRAVEKGKGQHYYNESVMNKISIKNVYVVKEVLRYEDELLIVQEMWKNAVMKSQKDLVSLINRKK
Ga0211625_1000133152F090233GAGMKIRVHGKNLPKKFRLGAYAMTELTLRDLLGKSRVIKNLEIDIHFRHHADNGEAMIHENEFRSKPRMFRVVIDPYKTRIDDYGREMSDEEHANEMFKVLGHELVHVKQYVVGDLSMRSKGMYWKGELTKIDNMMEYFKSPWEIEAYGLERYLWLNFIDFWKSNVEKYFEEKE
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