Scaffold Ga0211579_10065661

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211579_10065661

Scaffold Ga0211579_10065661

Overview

Basic Information
Taxon OID	3300020472 Open in IMG/M
Scaffold ID	Ga0211579_10065661 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2220
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_132
Coordinates	Lat. (^o)	31.4813	Long. (^o)	-159.088	Alt. (m)		Depth (m)	115
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007012	Metagenome	360	Y
F018077	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100656613	F007012	AGGAGG	MSIIFYCHRCDNKIECETKAQMKCDCGHYVKDHDDTRNHVNMRNTWSGTTKIEFNQTTIDKDIAERNAR
Ga0211579_100656615	F018077	AGGAGG	MTIRSLVSQLEKTFGRNSEAYIMQIINDGLLDIANKKQGYTVSATTDLEKNKRWYDLPATVLGIERVEILDSNDRYVLIPKLSDPHKLLRADTDASDDELK

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