Scaffold Ga0211579_10047502

Overview

Basic Information

• Taxon OID: 3300020472
• Scaffold ID: Ga0211579_10047502
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2676
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_132
• Coordinates
  • Lat. (^o): 31.4813
  • Long. (^o): -159.088
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003679	Metagenome / Metatranscriptome	474	Y
F014069	Metagenome / Metatranscriptome	266	N
F038858	Metagenome / Metatranscriptome	165	Y
F097476	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211579_100475021	F003679	GAG	MFKVILKNKFKERKIDLSVAVRVMYKQKFTGSIQQEHIKWWRQYWIKPINLEILYPKKGWITLVKVFREGKPSVRVITRPISSDKRELLVLKHNYGKED
Ga0211579_100475024	F038858	GGAGG	MKRIEKVGEVLIRTFTLPIRVCVGVYKCIEKATPDTLEMPFEIKRKEETDGKSSN
Ga0211579_100475025	F014069	AGGAGG	MEKAPINERVKTKVMPLTKWFAEQYFQTVELMQSDPRFKNLPSYNQTSCIATVIIATNSALDKSRDARNKAEVLKDISDAAEIKKAV
Ga0211579_100475029	F097476	GAG	MDLKKINEQLVPKKPDLYSPTNRYGVMGLALGADLHSRLKSYAIKNNLKMAQIIKLLVKSYLDEMENNENI